CDS

Accession Number TCMCG029C07400
gbkey CDS
Protein Id XP_023752912.1
Location join(1023943..1024290,1024886..1025037,1025178..1025300,1025411..1025555,1025655..1025716,1025798..1026014,1026091..1026981,1027500..1027749,1027842..1028107)
Gene LOC111901291
GeneID 111901291
Organism Lactuca sativa

Protein

Length 817aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA432228
db_source XM_023897144.1
Definition nuclear pore complex protein NUP88 [Lactuca sativa]

EGGNOG-MAPPER Annotation

COG_category UY
Description nuclear pore complex
KEGG_TC 1.l.1
KEGG_Module M00427        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14318        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
GOs GO:0000054        [VIEW IN EMBL-EBI]
GO:0000055        [VIEW IN EMBL-EBI]
GO:0000056        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005215        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006606        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009627        [VIEW IN EMBL-EBI]
GO:0009814        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0017038        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033365        [VIEW IN EMBL-EBI]
GO:0033750        [VIEW IN EMBL-EBI]
GO:0034504        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051170        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051640        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0051656        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071428        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072594        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGGTTTAATTTCGATATACCAGAACCTAGCAGCAAAGGAGCCCTAACACCACCGTCACAATCGCGGTCGCTAACACCACCGTCACAGTCACAGTCACGGTCACCGTCATCGGCTACTCCGGCAAACGAAGAGGTGGAATGGGTTCCTCTTCAGAACCACCCCATTTTCTCCAACGCCACAGCCACTCATTCATCGAATGATATCCCGAAGAAACGGAATCTCATGGCTTGGGACGGAGCTTCTCGGCTCTACTACTGGGACATAAATACGCAATCCTTACATCGAATTTCTCTTCGATTCGGTGAACCAGAACCCACTTCCGTCCTCGCCGCTTCCCCTACCAAGGTGATGCGAGCAGATGTTGCGCTCAATTTCATGGTGGACAGAATTACCATCAATAGACATGGATCAGCTTTACTCTTAGAGGGATCAGATGGCATACGAGTTATGTACCTTTATGGAAGTTCTTCATCAAAAGATAGTGCTGTTATTTGCAGGACAGTCTCTGTTGGATCAGATGTCTATTTCAACACAAATAATGCCATAAGGACTTTAAAAGTTTCATGGCACCCTTATAGCGACACTCACCTTGGGATCCTATCTTCTGATTCAGTTTTCAGGCTTTATGATTTGTCTGTGGCTCTTGAACAACCAGAACAAGAATATTATTTACAGCCAGTTGAACGTGGTAGATCAAGGAATGCTTCATCAATATGCCCTGTTGACTTTTCTTTTGGTGGTGATCATTTGTGGGACCGATTTAGTGTCTTTATTTTATTTAGTGATGGTTCAGTTTACATCTTATGTCCAGTTGTTCCTTTCGGGAGTGTGTACAAATGGGAATCTGTATTGGAGATATATAATGATGCTCAAACATTTGGACTCAAAGCCAGTAGCTCTAAAGCTGTTAGTAATGCCAACCTGGCAATTTCTTGGTTAGAAGCTACATTTCCTGATTTGGCTGAACAAGCAGCTGAAGGAGGGAATCAACCTGCACTAAAATCCCATCCTTACGCCTTATTTGATGCATCTGTTTCCTTACAGGGGCCTCTTCATAAAGTTTACCATGGTAAGGAAGAGGATCTCTCTGAATTGAAGGTTTCAGAGTGTGAGGGGAGAGCAGTTAGTTTTCTTTACAAAGCAGTAAGCAAAGATTCAGTTCTTGTTACAGCTTTTAGTAGTGGACAGTTACAAATAGATGCATTAGCCGATGAAATACAGCCTGTTTGGACACCTGGCAACCAGCCTCGTTTATCTGTTAATTCTCAAGATCGAATAATTGGTGTTGCCATGATATGTGAAACACATTCAAATGAGCTCTCTGTTGATCATGATATTTGGTTAGGACATTCACCACCCTTGTTGAAATTGGGGACTGTGGATTTAGCATTACCTGGAAAACCAGAATCCGGTTCCTTAATTTCTTTGTTTGTTGATCCACTTATACCTGAGAGAATATATTCGGTTCATGATGGAGGTGTGGATTCGATAGTGTTGCATTTTCTTCCTTTTACAAATCAGAAAAATGGGATAGATGATGACATCAGAGCTCCTAGTGTGCAATCGGTTTTGAGCACTTGCCAGGTGGAATCCTCGGTTTCAGCTCTTTGTGGTTTTGTGGCATTGTCTGACTCGTTTGGATGTTCTTGGATTGTGGGACTCACCTCTGGTTTTGAATGTGTTGTGATTGGAATGGAAAGTTGGAATCTTTTGCTTCCTGCTCGTATTGATAAAGAAAAGAAATTTGGAAATGGAAACTTGGAAGAGGCTGGGGATGCTACTATTATAAGTAAAGAATTACTCATGGGTCCAAAGGTTGTTATTGTTCCTCCAACCTCACAGAATCCTGTTGCTGCTGATTCCATTGAAGGGAGATCTACTCTTCATCAGTATTTCAAACTTTTTCATGAGAACTATGTGGAGTATGCACATAAGGTTTACTTTGAGCTTAAACACCATGGGCCTCAACTGAAGAAAATCATTGATGACCAACATGCGCGTTTACGCGAGGCACAACAGAAGCTAGCAAAGGTTGAAGAGAAACAAGAAAAGTTGGAGAAGCGAATAGATCATGTAATTCAGACTCATGATCACTTGGAAGAACGGTTGTTAAACCTTAAAAACCTACCAGGGATTCACAAGAAACCATTATCAAAAGCAGAACGAGAGTTCAAGATGGAGCTTGATAGATTTAGAGGGTTGGAATTGGATGCATTGCACACAACCATAGAAGCTATAAATGGTCGGATACAAAGATACTCATCTTCTCCACAAACCAAAAAACCCAACCAAAGAAGGCAAATTGCAGGAAGGAGGAAAGGGAATGCTGAAGATGATGAGATCTCTCACCTCAAGTCCTCCATTGCAAAACTTTCCATTGTCAACAATGAGAACACGAAAAAAGTCAAACTTGTGGATTCGGCTTTGAAAAACCGCGAAAGTAACCTTTGA
Protein:  
MRFNFDIPEPSSKGALTPPSQSRSLTPPSQSQSRSPSSATPANEEVEWVPLQNHPIFSNATATHSSNDIPKKRNLMAWDGASRLYYWDINTQSLHRISLRFGEPEPTSVLAASPTKVMRADVALNFMVDRITINRHGSALLLEGSDGIRVMYLYGSSSSKDSAVICRTVSVGSDVYFNTNNAIRTLKVSWHPYSDTHLGILSSDSVFRLYDLSVALEQPEQEYYLQPVERGRSRNASSICPVDFSFGGDHLWDRFSVFILFSDGSVYILCPVVPFGSVYKWESVLEIYNDAQTFGLKASSSKAVSNANLAISWLEATFPDLAEQAAEGGNQPALKSHPYALFDASVSLQGPLHKVYHGKEEDLSELKVSECEGRAVSFLYKAVSKDSVLVTAFSSGQLQIDALADEIQPVWTPGNQPRLSVNSQDRIIGVAMICETHSNELSVDHDIWLGHSPPLLKLGTVDLALPGKPESGSLISLFVDPLIPERIYSVHDGGVDSIVLHFLPFTNQKNGIDDDIRAPSVQSVLSTCQVESSVSALCGFVALSDSFGCSWIVGLTSGFECVVIGMESWNLLLPARIDKEKKFGNGNLEEAGDATIISKELLMGPKVVIVPPTSQNPVAADSIEGRSTLHQYFKLFHENYVEYAHKVYFELKHHGPQLKKIIDDQHARLREAQQKLAKVEEKQEKLEKRIDHVIQTHDHLEERLLNLKNLPGIHKKPLSKAEREFKMELDRFRGLELDALHTTIEAINGRIQRYSSSPQTKKPNQRRQIAGRRKGNAEDDEISHLKSSIAKLSIVNNENTKKVKLVDSALKNRESNL